A revised, hazy methane greenhouse for the Archean Earth (Astrobiology, 2008)

Here, we revisit this conclusion. Correction of an error in the CH4 absorption coefficients, combined with the predicted early onset of climatically cooling organic haze, suggest that the amount of greenhouse warming by CH4 was more limited and that pCO2 must therefore have been 0.03 bar, at or above the upper bound of the value obtained from paleosols. Enough warming from CH4 remained in the Archean, however, to explain why Earth’s climate cooled and became glacial when atmospheric O2 levels rose in the Paleoproterozoic. Our new model also shows that greenhouse warming by higher hydrocarbon gases, especially ethane (C2H6), may have helped to keep the Late Archean Earth warm.

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Tidal Heating of Terrestrial Extra-Solar Planets and Implications for their Habitability (MNRAS, 2008)

The tidal heating of hypothetical rocky (or terrestrial) extrasolar planets spans a wide range of values depending on stellar masses and initial orbits. Tidal heating may be sufficiently large (in many cases, in excess of radiogenic heating) and long-lived to drive plate tectonics, similar to the Earth’s, which may enhance the planet’s habitability. In other cases, excessive tidal heating may result in Io-like planets with violent volcanism, probably rendering them unsuitable for life. On water-rich planets, tidal heating may generate subsurface oceans analogous to Europa’s with similar prospects for habitability. Tidal heating may enhance the outgassing of volatiles, contributing to the formation and replenishment of a planet’s atmosphere. To address these issues, we model the tidal heating and evolution of hypothetical extrasolar terrestrial planets. The results presented here constrain the orbital and physical properties required for planets to be habitable.

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When did oxygenic photosynthesis evolve? (Philos Trans R Soc Lond B Biol Sci, 2008)

The atmosphere has apparently been oxygenated since the ‘Great Oxidation Event’ ca 2.4 Ga ago, but when the photosynthetic oxygen production began is debatable. However, geological and geochemical evidence from older sedimentary rocks indicates that oxygenic photosynthesis evolved well before this oxygenation event. Fluid-inclusion oils in ca 2.45 Ga sandstones contain hydrocarbon biomarkers evidently sourced from similarly ancient kerogen, preserved without subsequent contamination, and derived from organisms producing and requiring molecular oxygen. Mo and Re abundances and sulphur isotope systematics of slightly older (2.5 Ga) kerogenous shales record a transient pulse of atmospheric oxygen. As early as ca 2.7 Ga, stromatolites and biomarkers from evaporative lake sediments deficient in exogenous reducing power strongly imply that oxygen-producing cyanobacteria had already evolved. Even at ca 3.2 Ga, thick and widespread kerogenous shales are consistent with aerobic photoautrophic marine plankton, and U-Pb data from ca 3.8 Ga metasediments suggest that this metabolism could have arisen by the start of the geological record. Hence, the hypothesis that oxygenic photosynthesis evolved well before the atmosphere became permanently oxygenated seems well supported.

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Tides and the Evolution of Planetary Habitability (Astrobiology, 2008)

Tides raised on a planet by the gravity of its host star can reduce the planet’s orbital semi-major axis and eccentricity. This effect is only relevant for planets orbiting very close to their host stars. The habitable zones of low-mass stars are also close in, and tides can alter the orbits of planets in these locations. We calculate the tidal evolution of hypothetical terrestrial planets around low-mass stars and show that tides can evolve planets past the inner edge of the habitable zone, sometimes in less than 1 billion years. This migration requires large eccentricities (>0.5) and low-mass stars (≲0.35 M⊙). Such migration may have important implications for the evolution of the atmosphere, internal heating, and the Gaia hypothesis. Similarly, a planet that is detected interior to the habitable zone could have been habitable in the past. We consider the past habitability of the recently discovered, ∼5 M⊕ planet, Gliese 581 c. We find that it could have been habitable for reasonable choices of orbital and physical properties as recently as 2 Gyr ago. However, when constraints derived from the additional companions are included, most parameter choices that indicate past habitability require the two inner planets of the system to have crossed their mutual 3:1 mean motion resonance. As this crossing would likely have resulted in resonance capture, which is not observed, we conclude that Gl 581 c was probably never habitable. Astrobiology 8, 557–568.

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Microbial endemism: does phosphorus limitation enhance speciation? (Nature Reviews Microbiology, 2008)

There is increasing evidence for the existence of unique ecosystems that are dominated by locally adapted microbiota which harbour distinct lineages and biological capabilities, much like the macrobiota of Darwin’s Galapagos Islands. As a primary example of such a system, we highlight key discoveries from the Cuatro Ciénegas basin in Mexico. We argue that high microbial endemism requires a combination of geographical isolation, long-term continuity and mechanisms for reducing the intensity of horizontal gene transfer (HGT). We also propose that strong phosphorus limitation has an important role in microbial diversification by reducing the intensity of HGT.

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Evolutionary ecology during the rise of dioxygen in the Earth’s atmosphere (Philosophical Transactions of the Royal Society: B, 2008)

Pre-photosynthetic niches were meagre with a productivity of much less than 10−4 of modern photosynthesis. Serpentinization, arc volcanism and ridge-axis volcanism reliably provided H2. Methanogens and acetogens reacted CO2 with H2 to obtain energy and make organic matter. These skills pre-adapted a bacterium for anoxygenic photosynthesis, probably starting with H2 in lieu of an oxygen ‘acceptor’. Use of ferrous iron and sulphide followed as abundant oxygen acceptors, allowing productivity to approach modern levels. The ‘photobacterium’ proliferated rooting much of the bacterial tree. Land photosynthetic microbes faced a dearth of oxygen acceptors and nutrients. A consortium of photosynthetic and soil bacteria aided weathering and access to ferrous iron. Biologically enhanced weathering led to the formation of shales and, ultimately, to granitic rocks. Already oxidized iron-poor sedimentary rocks and low-iron granites provided scant oxygen acceptors, as did freshwater in their drainages. Cyanobacteria evolved dioxygen production that relieved them of these vicissitudes. They did not immediately dominate the planet. Eventually, anoxygenic and oxygenic photosynthesis oxidized much of the Earth’s crust and supplied sulphate to the ocean. Anoxygenic photosynthesis remained important until there was enough O2 in downwelling seawater to quantitatively oxidize massive sulphides at mid-ocean ridge axes.

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Biodiversity and biogeography of phages in modern stromatolites and thrombolites (Nature, 2008)

Viruses, and more particularly phages (viruses that infect bacteria), represent one of the most abundant living entities in aquatic and terrestrial environments. The biogeography of phages has only recently been investigated and so far reveals a cosmopolitan distribution of phage genetic material (or genotypes)1,2,3,4. Here we address this cosmopolitan distribution through the analysis of phage communities in modern microbialites, the living representatives of one of the most ancient life forms on Earth. On the basis of a comparative metagenomic analysis of viral communities associated with marine (Highborne Cay, Bahamas) and freshwater (Pozas Azules II and Rio Mesquites, Mexico) microbialites, we show that some phage genotypes are geographically restricted.

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Diversity and evolution of viruses in modern stromatolites and thrombolites (Nature, 2008)

Viruses, and more particularly phages (viruses that infect bacteria), represent one of the most abundant living entities in aquatic and terrestrial environments. The biogeography of phages has only recently been investigated and so far reveals a cosmopolitan distribution of phage genetic material (or genotypes)1,2,3,4. Here we address this cosmopolitan distribution through the analysis of phage communities in modern microbialites, the living representatives of one of the most ancient life forms on Earth. On the basis of a comparative metagenomic analysis of viral communities associated with marine (Highborne Cay, Bahamas) and freshwater (Pozas Azules II and Rio Mesquites, Mexico) microbialites, we show that some phage genotypes are geographically restricted. The high percentage of unknown sequences recovered from the three metagenomes (>97%), the low percentage similarities with sequences from other environmental viral (n = 42) and microbial (n = 36) metagenomes, and the absence of viral genotypes shared among microbialites indicate that viruses are genetically unique in these environments. Identifiable sequences in the Highborne Cay metagenome were dominated by single-stranded DNA microphages that were not detected in any other samples examined, including sea water, fresh water, sediment, terrestrial, extreme, metazoan-associated and marine microbial mats. Finally, a marine signature was present in the phage community of the Pozas Azules II microbialites, even though this environment has not been in contact with the ocean for tens of millions of years. Taken together, these results prove that viruses in modern microbialites display biogeographical variability and suggest that they may be derived from an ancient community.

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Observable Consequences of Planet Formation Models in Systems with close-in Terrestrial Planets (MNRAS, 2008)

To date, two planetary systems have been discovered with close-in, terrestrial-mass planets forumla⁠. Many more such discoveries are anticipated in the coming years with radial velocity and transit searches. Here we investigate the different mechanisms that could form ‘hot Earths’ and their observable predictions. Models include: (1) in situ accretion; (2) formation at larger orbital distance followed by inward ‘type 1’ migration; (3) formation from material being ‘shepherded’ inward by a migrating gas giant planet; (4) formation from material being shepherded by moving secular resonances during dispersal of the protoplanetary disc; (5) tidal circularization of eccentric terrestrial planets with close-in perihelion distances and (6) photoevaporative mass-loss of a close-in giant planet. Models 1–4 have been validated in previous work. We show that tidal circularization can form hot Earths, but only for relatively massive planets forumla with very close-in perihelion distances (≲0.025 au), and even then the net inward movement in orbital distance is at most only 0.1–0.15 au. For planets of less than forumla⁠, photoevaporation can remove the planet’s envelope and leave behind the solid core on a Gyr time-scale, but only for planets inside 0.025–0.05 au. Using two quantities that are observable by current and upcoming missions, we show that these models each produce unique signatures, and can be observationally distinguished. These observables are the planetary system architecture (detectable with radial velocities, transits and transit timing) and the bulk composition of transiting close-in terrestrial planets (measured by transits via the planet’s radius).

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